PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004511261.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24830.5 Da    PI: 9.8953
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004511261.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.17.2e-211764249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +i  ks  qvtfskRr g++KKA+EL++LC++e+a+++fs+ +k + +
  XP_004511261.1 17 KIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFSF 64
                    57789999*********************************9987655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.17868IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-29867IPR002100Transcription factor, MADS-box
CDDcd002651.00E-30978No hitNo description
SuperFamilySSF554557.46E-26983IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-171030IPR002100Transcription factor, MADS-box
PfamPF003192.5E-231764IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-173045IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-174566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MSKKKSSLGR QKIPIEKIPK KSHLQVTFSK RRSGLFKKAS ELCTLCGVEI AIVVFSPADK  60
AFSFGHPEVE SIIDRFLTRN PPQDSSAHQL VEAHRNANVR DLNIQLTQLL NHLEIEKKQG  120
EEIEHMRKAR QRQFWWESPI DELGLHELVQ LKGSIEELKK NLGKFASKCI MEQSNVSTPN  180
IGISGFGRYD SLENKPGVGI NLAPTIPNAY YYGFRNGYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A7e-16993186Myocyte-specific enhancer factor 2A
3kov_B7e-16993186Myocyte-specific enhancer factor 2A
3kov_I7e-16993186Myocyte-specific enhancer factor 2A
3kov_J7e-16993186Myocyte-specific enhancer factor 2A
3p57_A7e-16993186Myocyte-specific enhancer factor 2A
3p57_B7e-16993186Myocyte-specific enhancer factor 2A
3p57_C7e-16993186Myocyte-specific enhancer factor 2A
3p57_D7e-16993186Myocyte-specific enhancer factor 2A
3p57_I7e-16993186Myocyte-specific enhancer factor 2A
3p57_J7e-16993186Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004511261.11e-163PREDICTED: agamous-like MADS-box protein AGL61
SwissprotQ9FKK25e-57AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLG7J8131e-126G7J813_MEDTR; MADS-box transcription factor family protein
STRINGGLYMA20G27350.21e-121(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-58AGAMOUS-like 62